PATRIC: Genome Pattern Search

Pattern Search: Gene Sequences

Select organism(s) and enter a gene pattern, using regular expressions, to search through chromosomes.

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A-Z List

bacteria
- Brucellaceae (9)
  - Brucella abortus (3)
    - Brucella abortus S19
    - Brucella abortus bv. 1 str. 9-941
    - Brucella melitensis biovar Abortus 2308
  - Brucella canis (1)
    - Brucella canis ATCC 23365
  - Brucella melitensis (1)
    - Brucella melitensis 16M
  - Brucella ovis (1)
    - Brucella ovis ATCC 25840
  - Brucella suis (2)
    - Brucella suis 1330
    - Brucella suis ATCC 23445
  - Unclassified (1)
    - Brucella melitensis ATCC 23457 (1)
- Coxiellaceae (7)
  - Coxiella Burnetii (6)
    - Coxiella burnetii Dugway 5J108-111
    - Coxiella burnetii Nine Mile phase I
    - Coxiella burnetii Priscilla Q177
    - Coxiella burnetii R1140
    - Coxiella burnetii RSA 331
    - Coxiella burnetii RSA 493
  - Unclassified (1)
    - Coxiella burnetii 'MSU Goat Q177' (1)
- Rickettsiaceae (14)
  - Ancestral Group (3)
    - Rickettsia Bellii (2)
      - Rickettsia bellii OSU 85-389
      - Rickettsia bellii RML369-C
    - Rickettsia Canadensis (1)
      - Rickettsia canadensis str. McKiel
  - Spotted Fever Group (5)
    - Rickettsia Conorii (1)
      - Rickettsia conorii Malish 7
    - Rickettsia Rickettsii
    - Rickettsia Sibirica (1)
      - Rickettsia sibirica 246
    - Rickettsia africae (1)
      - Rickettsia africae ESF-5
    - Rickettsia massiliae (1)
      - Rickettsia massiliae MTU5
    - Rickettsia monacensis (1)
      - Rickettsia monacensis
  - Transitional Group (2)
    - Rickettsia Akari (1)
      - Rickettsia akari str. Hartford
    - Rickettsia Felis (1)
      - Rickettsia felis URRWXCal2
  - Typhus Group (2)
    - Rickettsia Prowazekii (1)
      - Rickettsia prowazekii str. Madrid E
    - Rickettsia Typhi (1)
      - Rickettsia typhi str. Wilmington
  - Unclassified (2)
    - Rickettsia rickettsii
    - Rickettsia rickettsii str. 'Sheila Smith'
    - Rickettsia rickettsii str. Iowa (2)
virus
- Caliciviridae (176)
  - Becovirus (proposed genus) (2)
    - Calicivirus isolate TCG 14
    - Calicivirus strain NB
  - Lagovirus (35)
    - Rabbit hemorrhagic disease virus Ascot
    - European brown hare syndrome virus EBHSV-GD
    - Rabbit hemorrhagic disease virus (Bahrain)
    - Rabbit hemorrhagic disease virus (strain FRG)
    - Rabbit hemorrhagic disease virus CD/China
    - Rabbit hemorrhagic disease virus Czech strain V351
    - Rabbit hemorrhagic disease virus Iowa2000
    - Rabbit hemorrhagic disease virus JX/CHA/97
    - Rabbit hemorrhagic disease virus Mexico89/MEX
    - Rabbit hemorrhagic disease virus RHDV
    - Rabbit hemorrhagic disease virus RHDV-Hokkaido/2002/JPN
    - Rabbit hemorrhagic disease virus Saudi Arabia
    - Rabbit hemorrhagic disease virus WHNRH
    - Rabbit hemorrhagic disease virus Dachswald
    - Rabbit hemorrhagic disease virus Eisenhuttenstadt
    - Rabbit hemorrhagic disease virus Erfurt
    - Rabbit hemorrhagic disease virus Frankfurt12
    - Rabbit hemorrhagic disease virus Frankfurt5
    - Rabbit hemorrhagic disease virus Hagenow
    - Rabbit hemorrhagic disease virus Hartmannsdorf
    - Rabbit hemorrhagic disease virus Jena
    - Rabbit hemorrhagic disease virus Meiningen
    - Rabbit hemorrhagic disease virus NZ54
    - Rabbit hemorrhagic disease virus NZ61
    - Rabbit hemorrhagic disease virus Rossi
    - Rabbit hemorrhagic disease virus Triptis
    - Rabbit hemorrhagic disease virus Wika
    - Rabbit hemorrhagic disease virus-AST89
    - Rabbit hemorrhagic disease virus-BS89
    - Rabbit hemorrhagic disease virus IN-05
    - Rabbit hemorrhagic disease virus Italy-90
    - Rabbit hemorrhagic disease virus Korea-90
    - Rabbit hemorrhagic disease virus NY-01
    - Rabbit hemorrhagic disease virus-SD
    - Rabbit hemorrhagic disease virus UT-01
  - Norovirus (100)
    - GI (4)
      - G1_1
      - G1_2
      - G1_3
      - G1_4 (1)
        
        Chiba virus Hu/NLV/Chiba 407/1987/JP
      - G1_5 (1)
        
        Norwalk-like virus SzUG1
      - G1_6 (2)
        
        Norwalk virus Norwalk-like BS5
        
        Norwalk-like virus WUG1
      - G1_7
      - G1_8
    - GII (16)
      - G2_1
      - G2_10
      - G2_11
      - G2_12 (2)
        
        Norwalk-like virus Saitama U1
        
        Norwalk-like virus Gifu 96/JP
      - G2_13
      - G2_14
      - G2_15
      - G2_16
      - G2_17
      - G2_2 (1)
        
        Snow Mountain virus
      - G2_3 (2)
        
        Norwalk-like virus Saitama U18
        
        Norwalk-like virus Saitama U201
      - G2_4 (3)
        
        Camberwell virus
        
        Human calicivirus Hu/NLV/GII/MD145-12/1987/US
        
        Lordsdale virus
      - G2_5
      - G2_6 (4)
        
        Norwalk-like virus Saitama U16
        
        Norwalk-like virus Saitama U17
        
        Norwalk-like virus Saitama U3
        
        Norwalk-like virus Saitama U4
      - G2_7
      - G2_8 (1)
        
        Norwalk-like virus Saitama U25
      - G2_9
      - Norovirus Hu/GII/Toronto/SK/2002/CAN
      - Norovirus Hu/GII/Toronto/SK/2005/CAN
      - Norovirus Hu/Texas/TCH04-577/2004/US
    - GIII (2)
      - G3_1
      - G3_2 (2)
        
        Norovirus Bo/Newbury2/1976/UK
        
        Norwalk-like virus Bo/Dumfries/94/UK
    - GIV (1)
      - G4_1 (1)
        
        Murine norovirus 1
    - GV
    - Hawaii calicivirus
    - Human calicivirus SLV/Bristol/98/UK
    - Murine norovirus Berlin/04/06/DE
    - Murine norovirus Berlin/05/06/DE
    - Murine norovirus Berlin/06/06/DE
    - Murine norovirus 1 clone CW10
    - Murine norovirus 1 clone CW11
    - Murine norovirus 1 clone CW2
    - Murine norovirus 1 clone CW4
    - Murine norovirus 1 clone CW5
    - Murine norovirus 1 clone CW6
    - Murine norovirus 1 clone CW7
    - Murine norovirus 1 clone CW8
    - Murine norovirus 1 clone CW9
    - Murine norovirus 2
    - Murine norovirus 3
    - Murine norovirus 4
    - Murine norovirus 5
    - Murine norovirus 6
    - Murine norovirus GV/CR1/2005/USA
    - Murine norovirus GV/CR10/2005/USA
    - Murine norovirus GV/CR11/2005/USA
    - Murine norovirus GV/CR13/2005/USA
    - Murine norovirus GV/CR15/2005/USA
    - Murine norovirus GV/CR17/2005/USA
    - Murine norovirus GV/CR18/2005/DEU
    - Murine norovirus GV/CR3/2005/USA
    - Murine norovirus GV/CR4/2005/USA
    - Murine norovirus GV/CR5/2005/USA
    - Murine norovirus GV/CR6/2005/USA
    - Murine norovirus GV/CR7/2005/USA
    - Murine norovirus GV/WU11/2005/USA
    - Murine norovirus GV/WU12/2005/USA
    - Murine norovirus GV/WU20/2005/USA
    - Murine norovirus GV/WU21/2005/USA
    - Murine norovirus GV/WU22/2005/USA
    - Murine norovirus GV/WU23/2005/USA
    - Murine norovirus GV/WU24/2005/USA
    - Murine norovirus GV/WU25/2005/USA
    - Murine norovirus GV/WU26/2005/USA
    - Murine norovirus MNV-1
    - Murine norovirus MNV-1.CW3
    - Newbury agent 1
    - Norovirus Hu/Chiba/04-1050/2005/JP
    - Norovirus Hu/Ehime/05-30/2005/JP
    - Norovirus Hu/GI/Otofuke/1979/JP
    - Norovirus Hu/GII.4/MD-2004/2004/US
    - Norovirus Hu/GII/Carlow/2002/Ire
    - Norovirus Hu/GII/Leverkusen267/2005/DE
    - Norovirus Hu/Guangzhou/NVgz01/CHN
    - Norovirus Hu/Houston/TCH186/2002/US
    - Norovirus Hu/MK04/2004/JP
    - Norovirus Hu/NLV/Dresden174/pUS-NorII/1997/GE
    - Norovirus Hu/NLV/GII/Neustrelitz260/2000/DE
    - Norovirus Hu/NLV/Oxford/B2S16/2002/UK
    - Norovirus Hu/NLV/Oxford/B4S1/2002/UK
    - Norovirus Hu/NLV/Oxford/B4S2/2002/UK
    - Norovirus Hu/NLV/Oxford/B4S4/2002/UK
    - Norovirus Hu/NLV/Oxford/B4S5/2002/UK
    - Norovirus Hu/NLV/Oxford/B4S6/2002/UK
    - Norovirus Hu/NLV/Oxford/B4S7/2002/UK
    - Norovirus Hu/OsakaNI/2004/JP
    - Norovirus Hu/Sakai/04-179/2005/JP
    - Norovirus genogroup 2 Hu/NoV/CS-G12002/USA
    - Norovirus genogroup 2 Hu/NoV/Farmington Hills/2002/USA
    - Norovirus isolates Plymouth
    - Norwalk virus
    - Norwalk virus Vietnam 026
    - Norwalk-like virus Hu/Norovirus/hiroshima/1999/JP(9912-02F)
    - Norwalk-like virus YURI/JP
    - Norwalk-like virus YURI 32073/JP
    - Norwalk-like virus Gifu 99/JP
    - Norwalk-like virus SW/NV/swine43/JP
    - Southampton virus
    - unassigned (3)
      - Human calicivirus Hu/NLV/Oxford/B5S22/2003/UK
      - Human calicivirus NLV/GII/Langen1061/2002/DE
      - Human calicivirus strain Mc37
  - Sapovirus (18)
    - Porcine enteric sapovirus Cowden
    - Porcine enteric sapovirus K7/JP
    - Porcine enteric sapovirus LL14/USA
    - Sapovirus C12
    - Sapovirus Ehime1107/2002/JP
    - Sapovirus Hu/Angelholm/SW278/2004/SE
    - Sapovirus Hu/Angelholm/SW314/2004/SE
    - Sapovirus Hu/Dresden/pJG-Sap01/DE
    - Sapovirus Hu/Ehime1596/1999/JP
    - Sapovirus Hu/Ehime475/2004/JP
    - Sapovirus Hu/Ehime643/March 2000/JP
    - Sapovirus Mc10
    - Sapovirus Mc2
    - Sapovirus NongKhai-24/Thailand
    - Sapovirus SaKaeo-15/Thailand
    - Sapporo virus Hu/Dresden/pJG-Sap01/DE
    - Sapovirus Hu/Chiba/000671/1999/JP
    - Sapporo virus-Manchester Manchester
  - Vesivirus (21)
    - Bovine calicivirus
    - Calicivirus isolate 2117
    - Canine calicivirus
    - Feline calicivirus
    - Feline calicivirus CFI/68/USA
    - Feline calicivirus F4
    - Feline calicivirus F65
    - Feline calicivirus FCV/DD/2006/GE
    - Feline calicivirus FCV2024
    - Feline calicivirus USDA
    - Feline calicivirus UTCVM-H1
    - Feline calicivirus UTCVM-H2
    - Feline calicivirus UTCVM-NH1
    - Feline calicivirus UTCVM-NH2
    - Feline calicivirus UTCVM-NH3
    - Feline calicivirus Urbana
    - Rabbit vesivirus
    - San Miguel sea lion virus serotype 1
    - VESV-like calicivirus Pan-1
    - Vesicular exanthema of swine virus
    - Walrus calicivirus (1)
- Coronaviridae (261)
  - Coronavirus (261)
    - G1 (31)
      - G1a (15)
        
        Feline coronavirus (FCoV/FIPV) cluster (5)
        
        Feline coronavirus Black
        
        Feline coronavirus DF-2
        
        Feline coronavirus FIPV 79-1146 VR-2202 (P100)
        
        Feline coronavirus
        
        Feline infectious peritonitis virus
        
        Porcine respiratory coronavirus (PRCoV) cluster (1)
        
        Porcine respiratory coronavirus
        
        Transmissible gastroenteritis virus (TGEV) cluster (9)
        
        TGEV Miller M6
        
        TGEV Miller M60
        
        TGEV Purdue P115
        
        TGEV virulent Purdue
        
        Transmissible gastroenteritis virus Purdue PUR46-MAD
        
        Transmissible gastroenteritis virus SC-Y
        
        Transmissible gastroenteritis virus TS
        
        Transmissible gastroenteritis virus sequence 1
        
        Transmissible gastroenteritis virus strain H
      - G1b (16)
        
        Bat coronavirus (BtCoV) 1A/1B cluster (2)
        
        Bat coronavirus 1A AFCD62
        
        Bat coronavirus 1B AFCD307
        
        Bat coronavirus (BtCoV) 512 cluster (1)
        
        Bat coronavirus (BtCoV/512/2005)
        
        Bat coronavirus (BtCoV) HKU2 cluster (4)
        
        Bat coronavirus HKU2/GD/430/2006
        
        Bat coronavirus HKU2/HK/298/2006
        
        Bat coronavirus HKU2/HK/33/2006
        
        Bat coronavirus HKU2/HK/46/2006
        
        Bat coronavirus (BtCoV) HKU8 cluster (1)
        
        Bat coronavirus HKU8 AFCD77
        
        Human coronavirus 229E (HCoV-229E) cluster (1)
        
        Human coronavirus 229E
        
        Human coronavirus NL63 (HCoV-NL63) cluster (5)
        
        HCoV NL63 seq 54
        
        Human coronavirus NL63 (Amsterdam 057)
        
        Human coronavirus NL63 (Amsterdam 496)
        
        Human coronavirus NL63 Amsterdam I
        
        Human coronavirus NL63 NL
        
        Porcine epidemic diarrhea virus (PEDV) cluster (2)
        
        Porcine epidemic diarrhea virus CV777
        
        Porcine epidemic diarrhea virus
    - G2 (214)
      - G2a (53)
        
        Bovine coronavirus (BCoV) cluster (17)
        
        Bovine coronavirus BCoV-ENT
        
        Bovine coronavirus BCoV-LUN
        
        Bovine coronavirus E-AH187
        
        Bovine coronavirus E-AH65
        
        Bovine coronavirus E-AH65-TC
        
        Bovine coronavirus Kakegawa
        
        Bovine coronavirus Mebus
        
        Bovine coronavirus Quebec
        
        Bovine coronavirus R-AH187
        
        Bovine coronavirus R-AH65
        
        Bovine coronavirus R-AH65-TC
        
        Bovine coronavirus isolate Alpaca
        
        Bovine coronavirus strain DB2
        
        Calf-giraffe coronavirus US/OH3/2006
        
        Giraffe coronavirus US/OH3-TC/2006
        
        Giraffe coronavirus US/OH3/2003
        
        Sable antelope coronavirus US/OH1/2003
        
        Equine coronavirus (ECoV) cluster (1)
        
        Equine coronavirus NC99
        
        Human coronavirus HKU1-A (HCoV-HKU1-A) cluster (13)
        
        Human coronavirus HKU1 A N1
        
        Human coronavirus HKU1 A N10
        
        Human coronavirus HKU1 A N11
        
        Human coronavirus HKU1 A N13
        
        Human coronavirus HKU1 A N14
        
        Human coronavirus HKU1 A N18
        
        Human coronavirus HKU1 A N19
        
        Human coronavirus HKU1 A N23
        
        Human coronavirus HKU1 A N24
        
        Human coronavirus HKU1 A N3
        
        Human coronavirus HKU1 A N6
        
        Human coronavirus HKU1 A N9
        
        Human coronavirus HKU1
        
        Human coronavirus HKU1-B (HCoV-HKU1-B) cluster (3)
        
        Human coronavirus HKU1 B N15
        
        Human coronavirus HKU1 B N2
        
        Human coronavirus HKU1 B N25
        
        Human coronavirus HKU1-C (HCoV-HKU1-C) cluster (6)
        
        Human coronavirus HKU1 C N16
        
        Human coronavirus HKU1 C N17
        
        Human coronavirus HKU1 C N20
        
        Human coronavirus HKU1 C N21
        
        Human coronavirus HKU1 C N22
        
        Human coronavirus HKU1 C N5
        
        Human coronavirus OC43 (HCoV-OC43) cluster (5)
        
        Human coronavirus OC43
        
        Human coronavirus OC43 19572 Belgium 2004
        
        Human coronavirus OC43 87309 Belgium 2003
        
        Human coronavirus OC43 ATCC VR-759
        
        Human coronavirus OC43 ATCC VR-759 (prototype strain)
        
        Murine hepatitis virus strain A59 (MHV-A59) cluster (6)
        
        Murine hepatitis virus A59 (recombinant virus)
        
        Murine hepatitis virus MHV-A59
        
        Murine hepatitis virus ML-10
        
        Murine hepatitis virus Penn 97-1
        
        Murine hepatitis virus strain 2 MHV-2
        
        Murine hepatitis virus strain ML-11
        
        Murine hepatitis virus strain JHM (MHV-JHM) cluster (1)
        
        Murine hepatitis virus strain JHM
        
        Porcine hemagglutinating encephalomyelitis virus (PHEV) cluster (1)
        
        Porcine hemagglutinating encephalomyelitis virus VW572
      - G2b (148)
        
        Bat coronavirus (BtCoV) 273 cluster (2)
        
        Bat coronavirus (BtCoV/273/2005)
        
        Bat coronavirus (BtCoV/279/2005)
        
        Bat-SARS coronavirus (Bat-SARS-CoV) cluster (6)
        
        Bat SARS coronavirus HKU3-1
        
        Bat SARS coronavirus HKU3-2
        
        Bat SARS coronavirus HKU3-3
        
        Bat SARS coronavirus Rf1
        
        Bat SARS coronavirus Rm1
        
        Bat SARS coronavirus Rp3
        
        SARS coronavirus (SARS-CoV) cluster (140)
        
        SARS Coronavirus CDC#200301157
        
        SARS coronavirus A022
        
        SARS coronavirus AS
        
        SARS coronavirus B039
        
        SARS coronavirus BJ01
        
        SARS coronavirus BJ02
        
        SARS coronavirus BJ03
        
        SARS coronavirus BJ04
        
        SARS coronavirus BJ162
        
        SARS coronavirus BJ202
        
        SARS coronavirus CFB/SZ/94/03
        
        SARS coronavirus CUHK-AG01
        
        SARS coronavirus CUHK-AG02
        
        SARS coronavirus CUHK-AG03
        
        SARS coronavirus CUHK-Su10
        
        SARS coronavirus CUHK-W1
        
        SARS coronavirus FRA
        
        SARS coronavirus Frankfurt 1
        
        SARS coronavirus Frankfurt 1 persistent virus #21
        
        SARS coronavirus GD01
        
        SARS coronavirus GD69
        
        SARS coronavirus GDH-BJH01
        
        SARS coronavirus GZ-A
        
        SARS coronavirus GZ-B
        
        SARS coronavirus GZ-C
        
        SARS coronavirus GZ-D
        
        SARS coronavirus GZ02
        
        SARS coronavirus GZ0401
        
        SARS coronavirus GZ0402
        
        SARS coronavirus GZ43
        
        SARS coronavirus GZ50
        
        SARS coronavirus GZ60
        
        SARS coronavirus HC/GZ/32/03
        
        SARS coronavirus HC/GZ/81/03
        
        SARS coronavirus HC/SZ/266/03
        
        SARS coronavirus HC/SZ/61/03
        
        SARS coronavirus HC/SZ/79/03
        
        SARS coronavirus HC/SZ/DM1/03
        
        SARS coronavirus HGZ8L1-A
        
        SARS coronavirus HGZ8L1-B
        
        SARS coronavirus HGZ8L2
        
        SARS coronavirus HKU-36871
        
        SARS coronavirus HKU-39849
        
        SARS coronavirus HKU-65806
        
        SARS coronavirus HKU-66078
        
        SARS coronavirus HSR 1
        
        SARS coronavirus HSZ-A
        
        SARS coronavirus HSZ-Bb
        
        SARS coronavirus HSZ-Bc
        
        SARS coronavirus HSZ-Cb
        
        SARS coronavirus HSZ-Cc
        
        SARS coronavirus HSZ2-A
        
        SARS coronavirus HZS2-Bb
        
        SARS coronavirus HZS2-C
        
        SARS coronavirus HZS2-D
        
        SARS coronavirus HZS2-E
        
        SARS coronavirus HZS2-Fb
        
        SARS coronavirus HZS2-Fc
        
        SARS coronavirus JMD
        
        SARS coronavirus LC1
        
        SARS coronavirus LC2
        
        SARS coronavirus LC3
        
        SARS coronavirus LC4
        
        SARS coronavirus LC5
        
        SARS coronavirus LLJ-2004
        
        SARS coronavirus NS-1
        
        SARS coronavirus PC4-13
        
        SARS coronavirus PC4-136
        
        SARS coronavirus PC4-227
        
        SARS coronavirus PUMC01
        
        SARS coronavirus PUMC02
        
        SARS coronavirus PUMC03
        
        SARS coronavirus SZ1
        
        SARS coronavirus SZ13
        
        SARS coronavirus SZ16
        
        SARS coronavirus SZ3
        
        SARS coronavirus ShanghaiQXC1
        
        SARS coronavirus ShanghaiQXC2
        
        SARS coronavirus Sin2500
        
        SARS coronavirus Sin2677
        
        SARS coronavirus Sin2679
        
        SARS coronavirus Sin2748
        
        SARS coronavirus Sin2774
        
        SARS coronavirus Sin3408
        
        SARS coronavirus Sin3408L
        
        SARS coronavirus Sin3725V
        
        SARS coronavirus Sin3765V
        
        SARS coronavirus Sin842
        
        SARS coronavirus Sin845
        
        SARS coronavirus Sin846
        
        SARS coronavirus Sin847
        
        SARS coronavirus Sin848
        
        SARS coronavirus Sin849
        
        SARS coronavirus Sin850
        
        SARS coronavirus Sin852
        
        SARS coronavirus SinP1
        
        SARS coronavirus SinP2
        
        SARS coronavirus SinP3
        
        SARS coronavirus SinP4
        
        SARS coronavirus SinP5
        
        SARS coronavirus Sino1-11
        
        SARS coronavirus Sino3-11
        
        SARS coronavirus SoD
        
        SARS coronavirus TJF
        
        SARS coronavirus TW1
        
        SARS coronavirus TW10
        
        SARS coronavirus TW11
        
        SARS coronavirus TW2
        
        SARS coronavirus TW3
        
        SARS coronavirus TW4
        
        SARS coronavirus TW5
        
        SARS coronavirus TW6
        
        SARS coronavirus TW7
        
        SARS coronavirus TW8
        
        SARS coronavirus TW9
        
        SARS coronavirus TWC
        
        SARS coronavirus TWC2
        
        SARS coronavirus TWC3
        
        SARS coronavirus TWH
        
        SARS coronavirus TWJ
        
        SARS coronavirus TWK
        
        SARS coronavirus TWS
        
        SARS coronavirus TWY TWY
        
        SARS coronavirus Taiwan TC1
        
        SARS coronavirus Taiwan TC2
        
        SARS coronavirus Taiwan TC3
        
        SARS coronavirus Tor2
        
        SARS coronavirus Urbani
        
        SARS coronavirus WH20
        
        SARS coronavirus WHU
        
        SARS coronavirus ZJ01
        
        SARS coronavirus ZJ01b
        
        SARS coronavirus ZJ0301
        
        SARS coronavirus ZMY 1
        
        SARS coronavirus ZS-A
        
        SARS coronavirus ZS-B
        
        SARS coronavirus ZS-C
        
        SARS coronavirus civet007
        
        SARS coronavirus civet010
        
        SARS coronavirus civet020
        
        SARS coronavirus seqence 1 (Institut Pasteur)
        
        SARS coronavirus sequence 1 (BC Cancer Agency)
        
        SARS coronavirus sequence 11
        
        SARS coronavirus sequence 2
        
        SARS coronavirus sequence 67
        
        SARS coronavirus strain CV7
        
        SARS coronavirus strain MA-15
      - G2c (9)
        
        Bat coronavirus (BtCoV) 133/HKU4/HKU5 cluster (9)
        
        Bat coronavirus (BtCoV/133/2005)
        
        Bat coronavirus HKU4-1
        
        Bat coronavirus HKU4-2
        
        Bat coronavirus HKU4-3
        
        Bat coronavirus HKU4-4
        
        Bat coronavirus HKU5-1
        
        Bat coronavirus HKU5-2
        
        Bat coronavirus HKU5-3
        
        Bat coronavirus HKU5-5
      - G2d (4)
        
        Bat coronavirus (BtCoV) HKU9 cluster (4)
        
        Bat coronavirus HKU9-1
        
        Bat coronavirus HKU9-2
        
        Bat coronavirus HKU9-3
        
        Bat coronavirus HKU9-4
    - G3 (16)
      - G3a (15)
        
        Infectious bronchitis virus (IBV) cluster (15)
        
        Avian infectious bronchitis virus (strain Beaudette CK)
        
        Avian infectious bronchitis virus Beaudette
        
        Avian infectious bronchitis virus partridge/GD/S14/2003 s14
        
        Infectious bronchitis virus BJ
        
        Infectious bronchitis virus Beaudette IBV-EP3
        
        Infectious bronchitis virus Beaudette IBV-p65
        
        Infectious bronchitis virus Beaudette 5a
        
        Infectious bronchitis virus CK/CH/LSD/05I
        
        Infectious bronchitis virus Cal99
        
        Infectious bronchitis virus LX4
        
        Infectious bronchitis virus M41
        
        Infectious bronchitis virus Mass 41
        
        Infectious bronchitis virus Peafowl/GD/KQ6/2003
        
        Infectious bronchitis virus SAIBK
        
        Infectious bronchitis virus A2
      - G3b (1)
        
        Coronavirus SW1 cluster (1)
        
        Coronavirus SW1
- Picornaviridae (62)
  - Hepatovirus (61)
    - Hepatitis A virus (61)
      - Genotype I (44)
        
        Subtype Ia (19)
        
        Hepatitis A virus AH1
        
        Hepatitis A virus AH2
        
        Hepatitis A virus AH3
        
        Hepatitis A virus DL3
        
        Hepatitis A virus F.G.
        
        Hepatitis A virus FH1
        
        Hepatitis A virus FH2
        
        Hepatitis A virus FH3
        
        Hepatitis A virus GBM/FRhK
        
        Hepatitis A virus GBM/HFS
        
        Hepatitis A virus GBM/WT
        
        Hepatitis A virus HAS-15
        
        Hepatitis A virus LA
        
        Hepatitis A virus LP014
        
        Hepatitis A virus LU38/WT
        
        Hepatitis A virus LY6
        
        Hepatitis A virus M2
        
        Patent WO0213855, Sequence 15
        
        Patent WO2004067747,Sequence 3
        
        Subtype Ib (25)
        
        Hepatitis A virus CR326
        
        Hepatitis A virus H2
        
        Hepatitis A virus H2K10
        
        Hepatitis A virus H2K15
        
        Hepatitis A virus H2K20
        
        Hepatitis A virus H2K25
        
        Hepatitis A virus H2K5
        
        Hepatitis A virus HAF-203
        
        HM-175 (3)
        
        Hepatitis A virus HM175/18f
        
        Hepatitis A virus HM175/24a
        
        Hepatitis A virus HM175/43c
        
        Hepatitis A virus HM-175 wild type
        
        Hepatitis A virus HM-175 attenuated
        
        Hepatitis A virus IVA
        
        Hepatitis A virus L-A-1
        
        Hepatitis A virus L8
        
        Hepatitis A virus MBB
        
        Patent US6113912, Sequence 1
        
        Patent US6113912, Sequence 3
        
        Patent US6113912, Sequence 5
        
        Patent US6180110, Sequence 1
        
        Patent US6180110, Sequence 3
        
        Patent US6423318, Sequence 1
        
        Patent US6423318, Sequence 3
        
        Patent US6423318, Sequence 5
      - Genotype II (2)
        
        Hepatitis A virus 9F94
        
        Hepatitis A virus CF53/Berne
      - Genotype III (12)
        
        Hepatitis A virus GA76
        
        Hepatitis A virus HMH
        
        Hepatitis A virus NOR-21
        
        Hepatitis A virus P27
        
        Simian hepatitis A virus PA21
        
        Subgenotype IIIA (3)
        
        Hepatitis A virus HA-JNG04-90
        
        Hepatitis A virus HA-JNG08-92
        
        Hepatitis A virus HAJ95-8
        
        Subgenotype IIIB (4)
        
        Hepatitis A virus HA-JNG06-90F
        
        Hepatitis A virus HAJ85-1
        
        Hepatitis A virus KRM003
        
        Hepatitis A virus KRM238G59
      - Genotype IV (1)
        
        Hepatitis A virus CY145
      - Genotype V (2)
        
        Simian hepatitis A virus AGM-27
        
        Patent US6146643, Sequence 1
  - Unclassified (1)
    - Hepatitis A virus VBA-07 (1)
- Hepeviridae (91)
  - Hepevirus (91)
    - Hepatitis E virus (91)
      - Genotype 1 (21)
        
        Hepatitis E virus individual patient infected with HEV
        
        Hepatitis E virus Lonawala, Western India
        
        Hepatitis E virus SAR-55
        
        Hepatitis E virus Chinese isolate of HEV
        
        Hepatitis E virus HEV Burma strain
        
        Hepatitis E virus HEVNE8L
        
        Hepatitis E virus HeBei
        
        Hepatitis E virus Hyderabad India
        
        Hepatitis E virus K52-87
        
        Hepatitis E virus Morocco
        
        Hepatitis E virus North India
        
        Hepatitis E virus Abb-2B
        
        Hepatitis E virus (strain SAR-55)
        
        Hepatitis E virus T3
        
        Hepatitis E virus TK15/92
        
        Hepatitis E virus Uigh179
        
        Hepatitis E virus Patent WO0157073
        
        Hepatitis E virus Xinjiang China
        
        Hepatitis E virus hev037
        
        Hepatitis E virus pSK-HEV-2
        
        Hepatitis E virus pSK-HEV-3
      - Genotype 2 (1)
        
        Hepatitis E virus Mexican
      - Genotype 3 (31)
        
        Hepatitis E virus Arkell
        
        Hepatitis E virus HE-JA04-1911
        
        Hepatitis E virus HE-JA10
        
        Hepatitis E virus HEV-US1
        
        Hepatitis E virus HEV-US2
        
        Hepatitis E virus HEVN1
        
        Hepatitis E virus JBOAR1-Hyo04
        
        Hepatitis E virus JDEER-Hyo03L
        
        Hepatitis E virus JE03-1760F
        
        Hepatitis E virus JJT-Kan
        
        Hepatitis E virus JKN-Sap
        
        Hepatitis E virus JMNG-Oki02C
        
        Hepatitis E virus JMO-Hyo03L
        
        Hepatitis E virus JMY-Haw
        
        Hepatitis E virus JRA1
        
        Hepatitis E virus JSO-Hyo03L
        
        Hepatitis E virus JTH-Hyo03L
        
        Hepatitis E virus JYO-Hyo03L
        
        Hepatitis E virus Osh 205
        
        Swine hepatitis E virus Meng
        
        Hepatitis E virus pSHEV-1
        
        Hepatitis E virus pSHEV-2
        
        Hepatitis E virus pSHEV-3
        
        Hepatitis E virus swJ12-4
        
        Hepatitis E virus swJ570
        
        Hepatitis E virus swJ8-5
        
        Hepatitis E virus swMN06-A1288
        
        Hepatitis E virus swMN06-C1056
        
        Hepatitis E virus wbJSG1
        
        Hepatitis E virus wbJTS1
        
        Hepatitis E virus wbJYG1
      - Genotype 4 (35)
        
        Hepatitis E virus CCC220
        
        Hepatitis E virus Ch-S-1
        
        Swine hepatitis E virus
        
        Hepatitis E virus HE-JA1
        
        Hepatitis E virus HE-JA19
        
        Hepatitis E virus HE-JA2
        
        Hepatitis E virus HE-JA28
        
        Hepatitis E virus HE-JA36
        
        Hepatitis E virus HE-JA37
        
        Hepatitis E virus HE-JA41
        
        Hepatitis E virus HE-JF3
        
        Hepatitis E virus HE-JF4
        
        Hepatitis E virus HE-JF5
        
        Hepatitis E virus HE-JI4
        
        Hepatitis E virus HE-JK4
        
        Hepatitis E virus HEVN2
        
        Hepatitis E virus IND-SW-00-01
        
        Hepatitis E virus JAK-Sai
        
        Hepatitis E virus JKK-Sap
        
        Hepatitis E virus JKO-ChiSai98C
        
        Hepatitis E virus JSF-Tot03C
        
        Hepatitis E virus JSM-Sap95
        
        Hepatitis E virus JSN-Sap-FH
        
        Hepatitis E virus JSN-Sap-FH02C
        
        Hepatitis E virus JTS-Sap02
        
        Hepatitis E virus JYI-ChiSai01C
        
        Hepatitis E virus JYN-Nii02L
        
        Hepatitis E virus JYN-Sap01C
        
        Hepatitis E virus JYW-Sap02
        
        Hepatitis E virus SH-SW-zs1
        
        Hepatitis E virus T1
        
        Hepatitis E virus swCH25
        
        Hepatitis E virus swCH31
        
        Hepatitis E virus swGX32
        
        Hepatitis E virus swJ13-1
      - Genotype 5 (proposed genotype) (2)
        
        Hepatitis E virus avian hepatitis E virus
        
        Avian hepatitis E virus
      - Unclassified (1)
        
        Hepatitis E virus Empty capsid (1)
- Rhabdoviridae (58)
  - Lyssavirus (57)

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