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Severe Acute Respiratory Syndrome (SARS) is an atypical pneumonia that was first seen in the Guangdong Province, People''s Republic of China in 2002. In early 2003, international travel contributed to spreading the disease to over 25 countries across five continents. A global effort coordinated by the World Health Organization was successful in identifying the etiologic agent of this epidemic as a new member of the coronavirus family, termed SARS coronavirus (SARS-CoV). The epidemic was successfully controlled in June, 2003 through the implementation of rigorous public health measures. The 2002-2003 outbreak resulted in 8096 cases of SARS with 774 deaths, for a case fatality rate of 9.6% (http://www.who.int/csr/sars/country).
The SARS-CoV genome is a positive-sense, single-stranded RNA of approximately 29,740 nt with 14 open reading frames and 9 transcription regulatory sequences (TRS).
Coronaviridae (288 genomes)
Coronavirus (276 genomes)
G1 (31 genomes)
G1a (15 genomes)
Canine coronavirus (CCoV) cluster (0 genome)
Feline coronavirus (FCoV/FIPV) cluster (5 genomes)
Porcine respiratory coronavirus (PRCoV) cluster (1 genome)
Transmissible gastroenteritis virus (TGEV) cluster (9 genomes)
Transmissible gastroenteritis virus Miller M6 (1 genome)
Transmissible gastroenteritis virus Miller M60 (1 genome)
Transmissible gastroenteritis virus Purdue P115 (1 genome)
Transmissible gastroenteritis virus Purdue PUR46-MAD (1 genome)
Transmissible gastroenteritis virus SC-Y (1 genome)
Transmissible gastroenteritis virus TS (1 genome)
Transmissible gastroenteritis virus sequence 1 (1 genome)
Transmissible gastroenteritis virus strain H (1 genome)
Transmissible gastroenteritis virus virulent Purdue (1 genome)
G1b (16 genomes)
Bat coronavirus (BtCoV) 1A/1B cluster (2 genomes)
Bat coronavirus (BtCoV) 512 cluster (1 genome)
Bat coronavirus (BtCoV) HKU2 cluster (4 genomes)
Bat coronavirus (BtCoV) HKU8 cluster (1 genome)
Human coronavirus 229E (HCoV-229E) cluster (1 genome)
Human coronavirus NL63 (HCoV-NL63) cluster (5 genomes)
Porcine epidemic diarrhea virus (PEDV) cluster (2 genomes)
G2 (224 genomes)
G2a (57 genomes)
Bovine coronavirus (BCoV) cluster (21 genomes)
Bovine coronavirus BCoV-ENT (1 genome)
Bovine coronavirus BCoV-LUN (1 genome)
Bovine coronavirus E-AH65 (1 genome)
Bovine coronavirus Kakegawa (1 genome)
Bovine coronavirus Mebus (1 genome)
Bovine coronavirus Quebec (1 genome)
Bovine coronavirus R-AH187 (1 genome)
Bovine coronavirus isolate Alpaca (1 genome)
Bovine coronavirus strain DB2 (1 genome)
Calf-giraffe coronavirus US/OH3/2006 (1 genome)
Giraffe coronavirus US/OH3-TC/2006 (1 genome)
Giraffe coronavirus US/OH3/2003 (1 genome)
Human enteric coronavirus 4408 (1 genome)
Sable antelope coronavirus US/OH1/2003 (1 genome)
Sambar deer coronavirus US/OH-WD388-TC/1994 (1 genome)
Sambar deer coronavirus US/OH-WD388-TC/1994 calf-passaged (1 genome)
Sambar deer coronavirus US/OH-WD388/1994 (1 genome)
Waterbuck coronavirus US/OH-WD358-GnC/1994 (1 genome)
Waterbuck coronavirus US/OH-WD358-TC/1994 (1 genome)
Waterbuck coronavirus US/OH-WD358/1994 (1 genome)
White-tailed deer coronavirus US/OH-WD470/1994 (1 genome)
Equine coronavirus (ECoV) cluster (1 genome)
Human coronavirus HKU1-A (HCoV-HKU1-A) cluster (13 genomes)
Human coronavirus HKU1 A N1 (1 genome)
Human coronavirus HKU1 A N10 (1 genome)
Human coronavirus HKU1 A N11 (1 genome)
Human coronavirus HKU1 A N13 (1 genome)
Human coronavirus HKU1 A N14 (1 genome)
Human coronavirus HKU1 A N18 (1 genome)
Human coronavirus HKU1 A N19 (1 genome)
Human coronavirus HKU1 A N23 (1 genome)
Human coronavirus HKU1 A N24 (1 genome)
Human coronavirus HKU1 A N3 (1 genome)
Human coronavirus HKU1 A N6 (1 genome)
Human coronavirus HKU1 A N7 (1 genome)
Human coronavirus HKU1 A N9 (1 genome)
Human coronavirus HKU1-B (HCoV-HKU1-B) cluster (3 genomes)
Human coronavirus HKU1-C (HCoV-HKU1-C) cluster (6 genomes)
Human coronavirus OC43 (HCoV-OC43) cluster (5 genomes)
Murine hepatitis virus strain A59 (MHV-A59) cluster (6 genomes)
Murine hepatitis virus strain JHM (MHV-JHM) cluster (1 genome)
Porcine hemagglutinating encephalomyelitis virus (PHEV) cluster (1 genome)
G2b (154 genomes)
Bat coronavirus (BtCoV) 273 cluster (2 genomes)
Bat-SARS coronavirus (Bat-SARS-CoV) cluster (6 genomes)
SARS coronavirus (SARS-CoV) cluster (146 genomes)
SARS Coronavirus CDC#200301157 (1 genome)
SARS coronavirus A022 (1 genome)
SARS coronavirus AS (1 genome)
SARS coronavirus B039 (1 genome)
SARS coronavirus BJ01 (1 genome)
SARS coronavirus BJ02 (1 genome)
SARS coronavirus BJ03 (1 genome)
SARS coronavirus BJ04 (1 genome)
SARS coronavirus BJ162 (1 genome)
SARS coronavirus BJ182-12 (1 genome)
SARS coronavirus BJ182-4 (1 genome)
SARS coronavirus BJ182-8 (1 genome)
SARS coronavirus BJ182a (1 genome)
SARS coronavirus BJ182b (1 genome)
SARS coronavirus BJ202 (1 genome)
SARS coronavirus CFB/SZ/94/03 (1 genome)
SARS coronavirus CUHK-AG01 (1 genome)
SARS coronavirus CUHK-AG02 (1 genome)
SARS coronavirus CUHK-AG03 (1 genome)
SARS coronavirus CUHK-Su10 (1 genome)
SARS coronavirus CUHK-W1 (1 genome)
SARS coronavirus FRA (1 genome)
SARS coronavirus Frankfurt 1 (1 genome)
SARS coronavirus Frankfurt 1 persistent virus #21 (1 genome)
SARS coronavirus GD01 (1 genome)
SARS coronavirus GD69 (1 genome)
SARS coronavirus GDH-BJH01 (1 genome)
SARS coronavirus GZ-A (1 genome)
SARS coronavirus GZ-B (1 genome)
SARS coronavirus GZ-C (1 genome)
SARS coronavirus GZ-D (1 genome)
SARS coronavirus GZ02 (1 genome)
SARS coronavirus GZ0401 (1 genome)
SARS coronavirus GZ0402 (1 genome)
SARS coronavirus GZ50 (1 genome)
SARS coronavirus HC/GZ/32/03 (1 genome)
SARS coronavirus HC/GZ/81/03 (1 genome)
SARS coronavirus HC/SZ/266/03 (1 genome)
SARS coronavirus HC/SZ/61/03 (1 genome)
SARS coronavirus HC/SZ/79/03 (1 genome)
SARS coronavirus HC/SZ/DM1/03 (1 genome)
SARS coronavirus HGZ8L1-A (1 genome)
SARS coronavirus HGZ8L1-B (1 genome)
SARS coronavirus HGZ8L2 (1 genome)
SARS coronavirus HKU-39849 (1 genome)
SARS coronavirus HSR 1 (1 genome)
SARS coronavirus HSZ-A (1 genome)
SARS coronavirus HSZ-Bb (1 genome)
SARS coronavirus HSZ-Bc (1 genome)
SARS coronavirus HSZ-Cb (1 genome)
SARS coronavirus HSZ-Cc (1 genome)
SARS coronavirus HSZ2-A (1 genome)
SARS coronavirus HZS2-Bb (1 genome)
SARS coronavirus HZS2-C (1 genome)
SARS coronavirus HZS2-D (1 genome)
SARS coronavirus HZS2-E (1 genome)
SARS coronavirus HZS2-Fb (1 genome)
SARS coronavirus HZS2-Fc (1 genome)
SARS coronavirus JMD (1 genome)
SARS coronavirus LC1 (1 genome)
SARS coronavirus LC2 (1 genome)
SARS coronavirus LC3 (1 genome)
SARS coronavirus LC4 (1 genome)
SARS coronavirus LC5 (1 genome)
SARS coronavirus LLJ-2004 (1 genome)
SARS coronavirus NS-1 (1 genome)
SARS coronavirus PC4-13 (1 genome)
SARS coronavirus PC4-136 (1 genome)
SARS coronavirus PC4-227 (1 genome)
SARS coronavirus PUMC01 (1 genome)
SARS coronavirus PUMC02 (1 genome)
SARS coronavirus PUMC03 (1 genome)
SARS coronavirus SZ16 (1 genome)
SARS coronavirus SZ3 (1 genome)
SARS coronavirus ShanghaiQXC1 (1 genome)
SARS coronavirus ShanghaiQXC2 (1 genome)
SARS coronavirus Sin0409 (0 genome)
SARS coronavirus Sin2500 (1 genome)
SARS coronavirus Sin2677 (1 genome)
SARS coronavirus Sin2679 (1 genome)
SARS coronavirus Sin2748 (1 genome)
SARS coronavirus Sin2774 (1 genome)
SARS coronavirus Sin3408 (1 genome)
SARS coronavirus Sin3408L (1 genome)
SARS coronavirus Sin3725V (1 genome)
SARS coronavirus Sin3765V (1 genome)
SARS coronavirus Sin842 (1 genome)
SARS coronavirus Sin845 (1 genome)
SARS coronavirus Sin846 (1 genome)
SARS coronavirus Sin847 (1 genome)
SARS coronavirus Sin848 (1 genome)
SARS coronavirus Sin849 (1 genome)
SARS coronavirus Sin850 (1 genome)
SARS coronavirus Sin852 (1 genome)
SARS coronavirus SinP1 (1 genome)
SARS coronavirus SinP2 (1 genome)
SARS coronavirus SinP3 (1 genome)
SARS coronavirus SinP4 (1 genome)
SARS coronavirus SinP5 (1 genome)
SARS coronavirus Sin_WNV (0 genome)
SARS coronavirus Sino1-11 (1 genome)
SARS coronavirus Sino3-11 (1 genome)
SARS coronavirus SoD (1 genome)
SARS coronavirus TJF (1 genome)
SARS coronavirus TW1 (1 genome)
SARS coronavirus TW10 (1 genome)
SARS coronavirus TW11 (1 genome)
SARS coronavirus TW2 (1 genome)
SARS coronavirus TW3 (1 genome)
SARS coronavirus TW4 (1 genome)
SARS coronavirus TW5 (1 genome)
SARS coronavirus TW6 (1 genome)
SARS coronavirus TW7 (1 genome)
SARS coronavirus TW8 (1 genome)
SARS coronavirus TW9 (1 genome)
SARS coronavirus TWC (1 genome)
SARS coronavirus TWC2 (1 genome)
SARS coronavirus TWC3 (1 genome)
SARS coronavirus TWH (1 genome)
SARS coronavirus TWJ (1 genome)
SARS coronavirus TWK (1 genome)
SARS coronavirus TWS (1 genome)
SARS coronavirus TWY TWY (1 genome)
SARS coronavirus Taiwan TC1 (1 genome)
SARS coronavirus Taiwan TC2 (1 genome)
SARS coronavirus Taiwan TC3 (1 genome)
SARS coronavirus Tor2 (1 genome)
SARS coronavirus Urbani (1 genome)
SARS coronavirus WH20 (1 genome)
SARS coronavirus WHU (1 genome)
SARS coronavirus ZJ01 (1 genome)
SARS coronavirus ZJ01b (1 genome)
SARS coronavirus ZJ02 (1 genome)
SARS coronavirus ZJ0301 (1 genome)
SARS coronavirus ZMY 1 (1 genome)
SARS coronavirus ZS-A (1 genome)
SARS coronavirus ZS-B (1 genome)
SARS coronavirus ZS-C (1 genome)
SARS coronavirus civet007 (1 genome)
SARS coronavirus civet010 (1 genome)
SARS coronavirus civet020 (1 genome)
SARS coronavirus seqence 1 (Institut Pasteur) (1 genome)
SARS coronavirus sequence 1 (BC Cancer Agency) (1 genome)
SARS coronavirus sequence 11 (1 genome)
SARS coronavirus sequence 2 (1 genome)
SARS coronavirus sequence 67 (1 genome)
SARS coronavirus strain CV7 (1 genome)
SARS coronavirus strain MA-15 (1 genome)
G2c (9 genomes)
Bat coronavirus (BtCoV) 133/HKU4/HKU5 cluster (9 genomes)
Bat coronavirus (BtCoV/133/2005) (1 genome)
Bat coronavirus HKU4-1 (1 genome)
Bat coronavirus HKU4-2 (1 genome)
Bat coronavirus HKU4-3 (1 genome)
Bat coronavirus HKU4-4 (1 genome)
Bat coronavirus HKU5-1 (1 genome)
Bat coronavirus HKU5-2 (1 genome)
Bat coronavirus HKU5-3 (1 genome)
Bat coronavirus HKU5-5 (1 genome)
G2d (4 genomes)
G3 (21 genomes)
G3a (20 genomes)
Infectious bronchitis virus (IBV) cluster (20 genomes)
Avian infectious bronchitis virus (strain Beaudette CK) (1 genome)
Avian infectious bronchitis virus Beaudette (1 genome)
Avian infectious bronchitis virus isolate Peafowl/GD/KQ6/2003 (1 genome)
Avian infectious bronchitis virus isolate SAIBK (1 genome)
Avian infectious bronchitis virus partridge/GD/S14/2003 (1 genome)
Avian infectious bronchitis virus strain Mass 41 (1 genome)
Infectious bronchitis virus BJ (1 genome)
Infectious bronchitis virus Beaudette IBV-EP3 (1 genome)
Infectious bronchitis virus Beaudette IBV-p65 (1 genome)
Infectious bronchitis virus Beaudette-Vero cell-adapted (1 genome)
Infectious bronchitis virus CK/CH/LSD/05I from China (1 genome)
Infectious bronchitis virus LX4 (1 genome)
Infectious bronchitis virus serotype California 99 (1 genome)
Infectious bronchitis virus strain A2 (1 genome)
Infectious bronchitis virus strain ArkDPI101 (1 genome)
Infectious bronchitis virus strain ArkDPI11 (1 genome)
Infectious bronchitis virus strain M41 (1 genome)
Turkey coronavirus MG10 (1 genome)
Turkey coronavirus TCoV-540 (1 genome)
Turkey coronavirus TCoV-ATCC (1 genome)
G3b (0 genome)
G3c (1 genome)
Unclassified (12 genomes)
- Feline coronavirus
- Infectious bronchitis virus
- Transmissible gastroenteritis virus
- Murine hepatitis virus strain A59
- Bovine coronavirus R-AH65-TC
- Bovine coronavirus E-AH187
- Bovine coronavirus E-AH65-TC
- Bovine coronavirus R-AH65
- Coronavirus SW1
- Munia coronavirus HKU13-3514
- Thrush coronavirus HKU12-600
- Bulbul coronavirus HKU11-796
- Feline coronavirus
Orthologs
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